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  • Analyser of structural variants of chromosomes Saphyr
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  • Analyser of structural variants of chromosomes Saphyr
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Analyser of structural variants of chromosomes Saphyr

Manufacturer:Bionano
Country:USA

Specialist consultation

+38 (067) 880 44 83

Details

Reveal genome-wide structural variation with the Saphyr™ optical genome mapping system.

 

Empower your lab with advanced SV detection using optical genome mapping.

 

Routinely detect all classes of structural variants down to 500 base pair (bp) resolution and 5% variant allele frequency (VAF) with optical genome mapping (OGM) using the Saphyr™ system. Saphyr™ is the most powerful structural variant detection tool available, detecting genomic variants commonly missed by next-generation sequencing (NGS) technologies and conventional cytogenetic techniques.

 

The Saphyr™ system provides optical genome mapping of ultra-high molecular weight (UHMW) DNA in its native state, from molecules 150 kbp to multi-megabase pairs in length.

 

Achieve broad, unbiased genomic coverage with flexible data collection.

 

The genomic coverage achieved with the Saphyr™ system is flexible and allows for the detection of heterozygous variants or rarer variants found in mosaic samples and heterogeneous tumors.

 

Collect 100X coverage of a human genome in as little as six hours. See deeper and rarer variants by simply extending the data collection time on Saphyr™ at no additional consumables cost. Achieve 400X coverage in 24 hours and provide SV detection down to 5% VAF. Further extend runs to see even lower VAF.

 

Experience seamless integration and workflow using the Saphyr™ Chip® consumable and Saphyr™ system.

 

The Saphyr Chips utilize hundreds of thousands of massively parallel nanochannels that linearize long, labeled DNA molecules, allowing the Saphyr instrument to directly image your samples.

 

Sample loading on the Saphyr Chip is fast and easy. Pipet up to three samples into individual flow cells on the chip. Load up to two chips onto the Saphyr instrument per run for a maximum throughput of six samples per run.

 

 

 

Characteristics

Structural Variant TypesInsertions ▪ Deletions ▪ Balanced and unbalanced translocations ▪ Inversions ▪ Duplications
Balanced and unbalanced translocationslarger than 50 kbp
Duplicationslarger than 30 kbp
Sample Input1.5 x 10*6 cells White blood cells (WBCs) for blood and BMA ▪ 10 – 30 mg tissue and tumor
Number of Samples3 / 6
Insertions / Deletions500 bp for diploid genomes ▪ 5 kbp for mosaic sample
Inversionslarger than 30 kbp
Sample TypesFresh/Frozen Tissue and Tumor ▪ Fresh/Frozen Bone Marrow Aspirates ▪ Fresh/Frozen Blood ▪ Fresh/Frozen Cell Lines
SoftwareBIONANO VIA™ SOFTWARE
Type of AnalysisOptical Genome Mapping (OGM)

Service and Warranty

We provide premium service and maintenance for every device and consumable: 

Comprehensive maintenance of medical equipment
Installations, commissioning
Warranty and post-warranty service
Instruction, training and consultations for your team

More details on the SERVICE page

Contact phone+38 (067) 120 95 75
E-mail:service@empirica.healthcare